INFECTIOUS DISEASE CATALOGUE 2017

Our Experts will satisfy your ExpectationsSEPSIS PANEL INFECTIOUS DISEASES (ID)MENINGOENCEPHALITIS CATALOGUERESPIRATORY INFECTION 2017PYREXIA OF UNKNOWN ORIGINSEXUAL TRANSMITTED DISEASE (from Molecular Division)NEONATAL MENINGITISGASTROENTERITIS VERSION 3.0 13.04.2017 A : 12A, Cowley Brown Road, R.S Puram(E), Coimbatore P : 0422 2540525, 2556628, 2550673 F : 0422 2541316 R W : www.microlabindia.com E : [email protected] MICROBIOLOGICAL T : 1800 425 1316 LABORATORY SINCE 1977

Alphabetical Index Page PageA Page Giardia lamblia . . . . . . . . . . . . . . . . . . . . . . . .13 Pan Bacteria . . . . . . . . . . . . . . . . . . . . . . . 11, 12 Group B Streptococcus Pan Fungal . . . . . . . . . . . . . . . . . . . . . . . . . . . 21Acinetobacter baumannii . . . . . . . . . . . . . . 5, 6 pan CMY+DHA-1 . . . . . . . . . . . . . . . . . . . . . . 6Acinetobacter spp., . . . . . . . . . . . . . . . . . . . . 16 (S.agalactiae) . . . . . . . . . . . . . . . . . . . .. . 8, 10 pan-SHV . . . . . . . . . . . . . . . . . . . . .. . . . . . . . . 5Adenovirus . . . . . . . . . . . . . . 10, 12-14, 17, 18, 20 pan-TEM . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5Aeromonas spp., . . . . . . . . . . . . . . . . . . . . 12, 13 H Pap Smear . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2Amikacin . . . . . . . . . . . . . . . . . . . . . . . . . . . . .19 Parainfluenza 1 . . . . . . . . . . . . . . . . . . 14, 17, 18Aspergillus spp., . . . . . . . . . . . . . . . . . . . . . 6, 7 H1N1 . . . . . . . . . . . . . . . . . . . . . . . . 14, 15, 17, 18 Parainfluenza 2 . . . . . . . . . . . . . . . . . . 14, 17, 18Astrovirus . . . . . . . . . . . . . . . . . . . . . . . . . .12, 13 Haemophilus influenza Parainfluenza 3 . . . . . . . . . . . . . . . . . . 14, 17, 18Atypical Mycobacteria(MOTT) . . . . . . . . . . .20 Parainfluenza 4 . . . . . . . . . . . . . . . . . .14, 17, 18 type B . . . . . . . . . . . . . . . . . . . . . 13, 16, 17, 18 Parechovirus . . . . . . . . . . . . . . . .9, 10, 14, 17, 18B Haemophilus Influenzae . . . . . . . . . . 11, 12, 13 Parvovirus B19 . . . . . . . . . . . . . . . . . . . . 2, 3, 10 Haemophilus spp., . . . . . . . . . . . . . . . . . . . . .9 Plasmodium falciparum . . . . . . . . . . . . . . . . .5Bordetella bronchiseptica . . . . . . . . . . . . . . .15 Hantaan virus . . . . . . . . . . . . . . . . . . . . . . . 3, 5 Plasmodium spp., . . . . . . . . . . . . . . . . . . . . 3,4Bordetella holmesii . . . . . . . . . . . . . . . . . . . . 15 Hepatitis B Virus (HBV) . . . . . . . . . . . . . 22, 23 Pneumocystis jiroveci . . . . . . . . . .13, 14, 17, 18Bordetella parapertussis . . . . . . . . . . . . . . . . 15 Hepatitis B Virus (HCV) . . . . . . . . . . . . . . . . 23 Procalcitonin (PCT) . . . . . . . . . . . . . . . . . . 6, 8Bordetella pertussis. . . . . . . . . . . . . . . . . . . . 15 Hisptoplasma capsulatum . . . . . . . . . . . . . . .21 Proteus mirabilis . . . . . . . . . . . . . . . . . . . . . . .6Bacteroides spp., . . . . . . . . . . . . . . . . . . . . 6, 7 Herpes Simplex virus 1 Pseudomonas aerugiosa . . . . . . . . . . . . . .6, 16Beta-lactamase CTX-M (HSV 1) . . . . . . . . . . . . . . . . . .1, 8, 9, 10, 11, 12 R Group 1 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 Herpes Simplex virus 2Beta-lactamase CTX-M Respiratory syncytial virus A . . . . . . . . . . . .16 (HSV 2) . . . . . . . . . . . . . . . . . 1, 8, 9, 10, 11, 12 Respiratory syncytial virus B . . . . . . .. . . . . . 16 Group 9 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 Human Herpes virus 6 Rhinovirus . . . . . . . . . . . . . . . . . . . . . .14, 17, 18Beta lactamase SHV . . . . . . . . . . . . . . . . . . . . 6 Rickettsia spp., . . . . . . . . . . . . . . . . . . . . . . .3, 4beta lactamase TEM . . . . . . . . . . . . . . . . . . . . 6 (hHV 6) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 Rifampicin . . . . . . . . . . . . . . . . . . . . . . 11, 18, 19BK virus . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 24 Human Herpes virus 6 Rotovirus . . . . . . . . . . . . . . . . . . . . . . . . . . 12, 13Blastocystis hominis . . . . . . . . . . . . . . . . . . . 13 Rubella virus . . . . . . . . . . . . . . . . . . . . . . . . . .2Blastomyces dermatidis . . . . . . . . . . . . . . . . .21 (hHV 7) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3Blood Culture Aerobic . . . . . . . . . . . . . . . . . . 3 Human Immunodeficiency SBocavirus . . . . . . . . . . . . . . . . . . .. . . . .14, 17, 18Bordetella spp., . . . . . . . . . . . . . . . . . .13, 16, 18 Virus Type I (HIV-1) . . . . . . . . . . . . . . . . 24 Salmonella spp., . . . . . . .3, 4, 5, 6, 12, 13, 17, 18Brucella spp., . . . . . . . . . . . . . . . . . . . . . . . . 3, 4 Human Metapneumovirus A/B . . . . .14, 17, 18 Sapovirus . . . . . . . . . . . . . . . . . . . . . . . . . .12, 13Burkholderia mallei/ pseudomallei . . . . . .3, 5 Human Papilloma Virus Shigella spp., . . . . . . . . . . . . . . . . . . . . . . . . .13 Staphylococcus spp., . . . . . . . . .. . . . . . . . . 5, 6C (HPV) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2 Staphylococcus aureus . . . . . . . . . . . . . . . . 5, 6 Streptococcus agalactiae . . . . . . . . . .5, 6, 8, 10Camphylobacter coli/jejuni. . . . . . . . . . . . . . 12 I StreptococcusCandida sp. (C.albicans and Influenza A(flu A) . . . . . . . . . . . . . .14, 15, 17, 18 pneumonia . . . . . . . 3, 4, 6, 9, 11, 12, 13, 16, 17 C. glabrata) . . . . . . . . . . . . . . . . . . . . . . . . 5, 6 Influenza B (flu B) . . . . . . . . . . . . .14, 15, 17, 18Chikungunya . . . . . . . . . . . . . . . . . . . . . . . . 3, 4 Influenza C(flu C) . . . . . . . . . . . . . .14, 15, 17, 18 TChlamydia pneumonia . . . . . . . . . .13, 16, 17, 18 Isoniazid . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19Chlamydia trachomatis. . . . . . . . . . . 1, 8, 6, 20 Trichosporon mentagrophytesClostridium difficile toxin B . . . . . . . . . . . . . 13 J complex . . . . . . . . . . . . . . . . . . . . . . . . . . . . 20Clostridium difficile . . . . . . . . . . . . . . .. . 12, 13Coronavirus 229E . . . . . . . . . . . . . . . . 14, 17, 18 Japanese encephalitis virus . . . . . . . . . . . . 3, 5 Trichophyton rubrum complex . . . . . . . . . . .20Coronavirus HKU1 . . . . . . . . . . . . . . . 14, 17, 18 Trichophyton tonsurans . . . . . . . . . . . . . . . . 20Coronavirus Nl63 . . . . . . . . . . . . . . . . 14, 17, 18 K Tricholosporum violaceum . . . . . . . . . . . . . .20Coronavirus Oc43 . . . . . . . . . . . . . . . 14, 17, 18 Toxoplasma gondii . . . . . . . . . . . . . . . . . 2, 5, 6Coxiella burnetii . . . . . . . . . . . . . . . . . . . . . 3, 4 Kanamycin . . . . . . . . . . . . . . . . . . . . . . . . . . . 19 Treponema pallidum . . . . . . . . . . . . . . . . . . . .1Cryptococcus neoformans . . . . . . . . . . . . . .5, 6 Klebsiella pneumoniae. . . . . . . . . . . . . . . . .5, 6 Trichomonas vaginalis . . . . . . . . . . . . . . . . . . 1Cryptosporidium spp., . . . . . . . . . . . . . . . . . .13CSF Culture . . . . . . . . . . . . . . . . . . . . . .9, 10, 11 L UCTX-M Group 1 . . . . . . . . . . . . . . . . . . . . . . 5, 6CTX-M group9 . . . . . . . . . . . . . . . . . . . . . . 5, 6 Legionella spp., . . . . . . . . . . . . . . . .13, 16, 17, 18 Ureaplasma urealyticum/Cyclospora cayetanensis . . . . . . . . . . . . . . . . 13 Leishmania spp., . . . . . . . . . . . . . . . . . . . . . 3, 5 parvum . . . . . . . . . . . . . . . . . . . . . . . . . . . 1, 8Cytomegalovirus Leptospira spp., . . . . . . . . . . . . . . . . . . . . . . 3, 4 Listeria monocytogenes . . . . . . . . . . .5, 6, 8, 10 V (CMV) . . . . . . . . . . .2, 5, 6, 8, 10, 11, 12, 17, 25 M Vancomycin A/B . . . . . . . . . . . . . . . . . . . . . 5, 6D Varicella Zoaster Virus Microsporum audouinii . . . . . . . . . . . . . . . . 20Dengue virus . . . . . . .. . . . . . . . . . . . . . . . . . 3, 4 Microsporum canis. . . . . . . . . . . . . . . . . . . . .20 (VZV) . . . . . . . . . . . . . . 2, 3, 8, 9, 10, 11, 12, 20Dientamoeba fragilis . . . . . . . . . . . . . . . . . . 13 Microsporum ferrugineum . . . . . . . . . . . . . 20 Vibrio spp., . . . . . . . . . . . . . . . . . . . . . . . . . . . 13 Measles Virus . . . . . . . . . . . . . . . . . . . . . . . . . 3E mecA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5, 6 W Methicillin-resistance gene . . . . . . . . . . . . . . 6Escherichia coli. . . . . . . . . . . . . . . . . . . . . . 5, 6 Moraxella catarrhalis .. . . . . . . . . 13, 16, 17, 18 West Nile virus . . . . . . . . . . . . . . . . . . . . . . . 3, 4Entamoeba histolytica . . . . . . . . . . . . . . . . . 13 Mumps virus . . . . . . . . . . . . . . . . . . . . . . . . . . 9Enterobacter spp., . . . . . . . . . . . . . . . . . . . 6, 7 Mycobacterium tuberculosis YEnterobacteriaceae . . . . . . . . . . . . . . . . . . . 5, 6Enterococcus faecalis . . . . . . . . . . . . . . . . 5, 6 complex. . . . . . . . . . . . . . . . . . . . . . 5, 6, 11, 12 Yellow fever virus . . . . . . . . . . . . . . . . . . . . .3, 4Enterococcus faecium . . . . . . . . . . . . . . . . 5, 6 Mycoplasma genitalium . . . . . . . . . . . . . . . . . 1 Yersinia enterocolitica . . . . . . . . . . . . . . . . . . 13Enterovirus . . . . . . . 3, 8, 9, 10, 11, 12, 14, 17, 18 Mycoplasma pneumoniae . . . . . . .13, 14, 17, 18Epstein-barr virus . . . . . . . . . . . . . . . . . . . . . 10Escherichia coli verotoxin N positive (VTEC) . . . . . . . . . . . . . . . . . . . . . 12 Neisseria gonorrhoeae . . . . . . . . . . . . . . . . . . .1 Neisseria Meningitis . . . . . . . . . . . . . . 9, 11, 12G Norovirus G1 . . . . . . . . . . . . . . . . . . . . . . . 12, 13 Norovirus G2 . . . . . . . . . . . . . . . . . . . . . . 12, 13Gardnerella vaginalis . . . . . . . . . . . . . . . . . . . .1 P Plasmodium malariae . . . . . . . . . . . . . . . . . . . 5 Plasmodium ovale . . . . . . . . . . . . . . . . . . . . . . 5 Plasmodium vivax . . . . . . . . . . . . . . . . . . . . . . 5

p1 PACKAGE LIST STD - I (90270) Principle : Real Time PCR Specimen : Urethral swab/ Vaginal swab/ Rectal swab/ Urine/ Cervical Scrapings Pathogens (09) : Chlamydia trachomatis, Neisseria gonorrhoeae, Mycoplasma genitalium, Trichomonas vaginalis, Gardnerella vaginalis, Ureaplasma urealyticum/parvum, HSV1, HSV2, Treponema Pallidum(90297) STD - II Real Time PCR : PrincipleUrine / Cervical Scrapings/ Urethral swab/ Vaginal swab : SpecimenChlamydia trachomatis, Neisseria gonorrhoeae : (06) Pathogens Mycoplasma genitalium, HSV1, HSV 2, Treponema pallidum CHLAMYDIA DNA (09419) Principle : Real Time PCR Specimen : Urethral swab/ Vaginal swab/ Rectal swab/ Urine/ Cervical Scrapings Pathogen (01) : Chlamydiae trachomatis

p2 PACKAGE LIST GONOCOCCI DNA (09418) Principle : Real Time PCR Specimen : Urethral swab/ Vaginal swab/ Rectal swab/ Urine/ Cervical Scrapings Pathogen (01) : Neisseriae gonorrhoeae(90313) HPV HR GENOTYPE + THINPREP Real Time PCR : PrincipleUrethral swab/ Vaginal swab/ Rectal swab/ Urine / Cervical Scrapings : SpecimenHPV with 14 High Risk Genotypes , Pap Smear : (16) Pathogens TORCH Molecular TEST (90314) Principle : Multiplex Tandem PCR Specimen : Amniotic Fluid/ Blood/ CSF Pathogens (07) : Toxoplasma gondii, Varicella Zoaster Virus (VZV), Cytomegalo Virus (CMV), HSV 2, HSV 1, Parvovirus B19, Rubella virus

p3 PACKAGE LIST Fever & Rash (90271) Principle : Real Time PCR Specimen : CSF/ Blood / Throat swab/ Sputum/ Stools Pathogens (06) : hHV 6, hHV 7, Parvovirus B19, Enterovirus, Measles Virus, VZV(90296) P.U.O - I Real Time PCR : Principle Blood(EDTA) / Urine : SpecimenDengue virus, Rickettsia spp., Salmonella spp., West : (15)PathogensNile virus, Plasmodium spp., Chikungunya, Leptospira spp., Brucellaspp., Streptococcus pneumoniae, Yellow fever virus, Coxiella burnetii,Burkholderia mallei/ pseudomallei, Hantaan virus, Leishmania spp.,Japanese encephalitis virus P.U.O - II (90343) Principle : Real Time PCR Specimen : Blood (EDTA)/ Urine Pathogens (16) : Dengue virus, Rickettsia spp., Salmonella spp. West Nile virus, Plasmodium spp, Chikungunya, Leptospira spp, Brucella spp, Streptococcus pneumoniae, Yellow fever virus, Coxiella burnetii, Burkholderia mallei/ pseudomallei, Hantaan virus, Leishmania spp, Japanese encephalitis virus, Blood Culture Aerobic

p4 PACKAGE LIST TROPICAL FEVER -I (90272) Principle : Real Time PCR Specimen : Blood (EDTA) / Urine Pathogens (04) : Dengue virus, Rickettsia spp., Salmonella spp, West Nile virus(90273) TROPICAL FEVER - II Real Time PCR : Principle Blood(EDTA) / Urine : SpecimenDengue virus, Rickettsia spp., Salmonella spp., : (07) PathogensWest Nile virus, Plasmodium spp., Chikungunya, Leptospira spp. TROPICAL FEVER - III (90274) Principle : Real Time PCR Specimen : Blood (EDTA)/ Urine Pathogens (04) : Brucella spp., Yellow fever virus, Coxiella burnetii Streptococcus pneumoniae

p5 PACKAGE LIST TROPICAL FEVER - IV (90275) Principle : Real Time PCR Specimen : Blood(EDTA) / Urine Pathogens (04) : Burkholderia mallei/ pseudomallei, Hantaan virus, Leishmania spp., Japanese encephalitis virus(90264) MALARIAL PARASITE PCR Real Time PCR : Principle EDTA Blood : SpecimenP.vivax, P.falciparum, P.ovale, P.malariae : (04) Pathogens SEPSIS - I (90308) Principle : Multiplex Tandem PCR Specimen : Blood(EDTA) Pathogens (34) : E.coli, S.agalactiae, S.aureus, K.pneumoniae, Enterobacteriaceae, E.faecium, E.faecalis, Staphylococcus spp, P.aeruginosa, P.mirabilis, A.baumannii, CMV, C.trachomatis, pan (TEM, SHV) , CTX-M (group1,9), Ureaplasma, Listeria monocytogenes, mecA, CMY/DHA, KPC, VIM/NDM-1, oxa1, oxa48, Vancomycin A/B, Salmonella spp., Mpt64, Toxoplasma gondii, Cryptococcus neoformans, Candida sp.

p6 PACKAGE LIST SEPSIS - II (90342) Principle : Multiplex Tandem PCR Specimen : Blood(EDTA) + Serum Pathogens (35) : E.coli, S.agalactiae, S.aureus, K.pneumoniae, Enterobacteriaceae, E.faecium, E.faecalis, Staphylococcus spp., P.aeruginosa, P.mirabilis, A.baumannii, CMV, C.trachomatis, Ureaplasma, Listeria monocytogenes, (pan-TEM, SHV), CTX-M group1, mecA, CMY/DHA, KPC, VIM/NDM-1, oxa (1,48) Vancomycin A/B, CTX-M group9, Salmonella spp., Mycobacterium tuberculosis complex, Mycobacterium tuberculosis (Mpt64), Toxoplasma gondii, Cryptococcus neoformans, Candida sp., Procalcitonin (PCT)(90396) SEPSIS - III Multiplex Tandem PCR : Principle Blood(EDTA) : Specimen Staphylococcus spp., Staphylococcus aureus, : (37) Pathogens Streptococcus pneumoniae, Staphylococcus spp, Staphylococcus aureus,Enterococcus faecalis, Enterococcus faecium, Streptococcus specific gene, Listeria monocytogenes, Klebsiella pneumoniae, Proteus mirabilis,Enterobacteriaceae, Pseudomonas aeruginosa, Acinetobacter baumannii, Ureaplasma, Chlamydia trachomatis (MOMP), Cytomegalovirus, Vancomycin A/B, oxa 48, oxa 1, E.coli Beta-glucuronidase gene, Beta-lactamase CTX-M Group 1, VIM/NDM-1, Beta-lactamase CTX-M Group 9, beta lactamase TEM, Methicillin-resistance gene, Klebsiella pneumoniae carbapenemase (KPC), pan CMY+DHA-1, Beta lactamase SHV,Enterobacter spp., Mycobacterium tuberculosis complex, Salmonella spp., Aspergillus spp., Candida sp. (C.albicans and C.glabrata), Cryptococcus neoformans, Toxoplasma gondii, Mycobacterium tuberculosis (Mpt64), Bacteroides spp.,

p7 PACKAGE LIST (09422) Aspergillus spp (DNA) Principle : Real Time PCR Specimen : Blood(EDTA) / Serum Pathogen (01) : Aspergillus spp.(09423) Bacteroides spp(DNA) Real Time PCR : Principle Blood(EDTA) /Serum : Specimen Bacteroides spp., : (01) Pathogen Enterobacter spp (DNA) (09424) Principle : Real Time PCR Specimen : Blood(EDTA) / Serum Pathogen (01) : Enterobacter spp

p8 PACKAGE LIST NEONATAL SEPSIS - I (90276) Principle : Real Time PCR Specimen : Blood(EDTA) / CSF Pathogens (07) : Group B Streptococcus (S.agalactiae), Listeria monocytogenes , Escherichia coli, Staphylococcus aureus, Chlamydia trachomatis, Cytomegalovirus, Ureaplasma urealyticum/parvum(90341) NEONATAL SEPSIS - II Real Time PCR : Principle CSF /Blood(EDTA) : Specimen Escherichia coli, Cytomegalovirus : (08) PathogensGroup B Streptococcus (S.agalactiae), Listeria monocytogenes, Chlamydia trachomatis, Ureaplasma urealyticum/parvum, Procalcitonin (PCT), Staphylococcus aureus VIRAL ENCEPHALITIS (90258) Principle : Real Time PCR Specimen : CSF Pathogens (05) : HSV1, HSV2, VZV, CMV, Enterovirus

p9 PACKAGE LIST BACTERIAL MENINGITIS - I (90257) Principle : Real Time PCR Specimen : CSF Pathogens (04) : Streptococcus pneumoniae, Neisseria Meningitis, Haemophilus spp., Pan Bacteria(90339) BACTERIAL MENINGITIS - II Real Time PCR : Principle CSF : SpecimenStreptococcus pneumoniae, Neisseria Meningitis : (05) Pathogens Haemophilus spp., CSF Culture, Pan Bacteria VIRAL MENINGITIS (90277) Principle : Real Time PCR Specimen : CSF Pathogens (06) : HSV1, HSV2, VZV, Mumps virus, Enterovirus, Parechovirus

p10 PACKAGE LIST VIRAL MENINGITIS PANEL (90306) Principle : Real Time PCR Specimen : CSF Pathogens (10) : HSV1, HSV2, VZV, Enterovirus, Parechovirus, hHV6, hHV7, CMV, Adenovirus, Epstein-barr virus, Parvovirus B19(90278) NEONATAL MENINGITIS - I Real Time PCR : Principle CSF : Specimen Group B Streptococcus (S.agalactiae) : (03) Pathogens Escherichia coli, Listeria monocytogenes NEONATAL MENINGITIS - II (90340) Principle : Real Time PCR Specimen : CSF Pathogens(04) : Group B Streptococcus (S.agalactiae), CSF Culture Listeria monocytogenes , Escherichia coli,

p11 PACKAGE LIST MENINGOENCEPHALITIS - I (90261) Principle : Real Time PCR Specimen : CSF Pathogens (10) : Streptococcus pneumoniae, Neisseria Meningitis, Haemophilus Influenzae, HSV1, HSV2, VZV, Enterovirus, Mycobacterium tuberculosis complex, CMV, Pan Bacterium(90263) MENINGOENCEPHALITIS MTB II Real Time PCR : Principle CSF : SpecimenStreptococcus pneumoniae, Neisseria meningitis : (10) Pathogens CMV, Pan Bacteria, Haemophilus Influenzae, HSV1, HSV2, VZV, Enterovirus, Mycobacterium tuberculosis complex/Rifampicin MENINGOENCEPHALITIS - II (90338) Principle : Real Time PCR Specimen : CSF Pathogens (11) : Streptococcus pneumoniae, Neisseria Meningitis, Haemophilus Influenzae, HSV1, HSV2, VZV, Enterovirus, Mycobacterium tuberculosis complex, CMV, CSF Culture, Pan Bacterium

p12 PACKAGE LIST MENINGOENCEPHALITIS PLUS (90345) Principle : Real Time PCR Specimen : CSF Pathogens (12) : Streptococcus pneumoniae, Neisseria meningitis Mycobacterium tuberculosis complex, Haemophilus influenzae, HSV1, HSV2, VZV, Cryptococcus DNA-PCR, Plasmodium falciparum, Enterovirus, CMV, Toxoplasma gondii, Pan Bacterium(90279/ 90349) GASTROENTERITIS -BACTERIAL Real Time PCR : Principle Stool : Specimen Camphylobacter coli/jejuni, Escherichia coli : (08) Pathogens verotoxin positive (VTEC), Salmonella spp, Shigella spp, Yersinia enterocolitica, Clostridium difficile,Vibrio spp., Aeromonas spp., GASTROENTERITIS - VIRAL (90280) Principle : Real Time PCR Specimen : Stool Pathogens (06) : Norovirus G1, Norovirus G2, Adenovirus, Astrovirus, Rotovirus, Sapovirus

p13 PACKAGE LIST GASTROENTERITIS - PARASITE (90347) Principle : Real Time PCR Specimen : Stool Pathogens (06) : Giardia lamblia, Entamoeba histolytica, Cryptosporidium spp, Blastocystis hominis, Dientamoeba fragilis, Cyclospora cayetanensis(90348) GASTROENTERITIS - COMBINED Real Time PCR : Principle Stool : SpecimenNorovirus GI, Norovirus G2,Rotovirus, Adenovirus : (20)PathogensAstrovirus, Sapovirus, Campylobacter coli/jejuni, Clostridium difficiletoxin B, Salmonella spp., EIEC, Shigella spp., Vibrio spp., Yersiniaenterocolitica, Aeromonas spp., Clostridium difficile hypervirulent,Giardia lamblia, Entamoeba histolytica, Cryptosporidium spp.,Blastocystis hominis, Dientamoeba fragilis, Cyclospora cayetanensis RESPIRATORY INFECTIONS - BACTERIAL (90282) Principle : Real Time PCR Specimen : Throat/nasal swab/ BAL/ Tracheal Aspirates/ Lung Tissue/ Sputum Pathogens (12) : Moraxella catarrhalis, Bordetella spp., Haemophilus Influenzae, Klebsiella pneumoniae, Legionella spp., Salmonella spp., Pneumocystis jirovecii, Streptococcus pneumoniae, Haemophilus influenzae type B, Staph.aureus, Mycoplasma pneumoniae, Chlamydia pneumoniae

p14 PACKAGE LIST RESPIRATORY INFECTIONS – VIRAL (90283) (ID PANEL -17) Principle : Real Time PCR Specimen : Throat/nasal swabs/ BAL/ Tracheal Aspirates/Lung Tissue/ Sputum Pathogen (20) : Influenza A(flu A), Influenza B (flu B), Rhinovirus, Coronavirus Nl63, Coronavirus 229E, Coronavirus OC43, Coronavirus HKU1, Parainfluenza 1, Parainfluenza 2, Parainfluenza 3, Parainfluenza 4, H1N1, Bocavirus, Mycoplasma pneumoniae, Respiratory syncytial virus A/B, Adenovirus, Enterovirus, Parechovirus, Human Metapneumovirus A/B, CMV(90326) RESPIRATORY INFECTIONS - VIRAL (RIPAER) Real Time PCR : PrincipleSputum/ Lung Tissue/ Tracheal Aspirates/ BAL / Throat swab/nasal swab : SpecimenParainfluenza 1, Parainfluenza 2, Parainfluenza 3 : (10) Pathogens Rhinovirus, Respiratory syncytial virus A/B, Parainfluenza 4, Influenza A(flu A), Influenza B (flu B), Adenovirus, Enterovirus RESPIRATORY INFECTIONS - OTHER (90284) Principle : Real Time PCR Specimen : Throat/nasal swab/ BAL/ Tracheal Aspirates/ Lung Tissue/ Sputum Pathogen (01) : Pneumocystis jiroveci

p15 PACKAGE LIST (09199) GAS (GABHS) Principle : Real Time PCR Specimen : Throat Swab Pathogen (01) : Group A Streptococcus(90333) BORDETELLA (WOOPING COUGH) PANEL Real Time PCR : Principle Throat swab/ Nasal swab/ BAL/ Sputum : Specimen B.pertussis, B.bronchiseptica, B.parapertussis, : (04) Pathogens B.holmesiiRESPIRATORY INFECTIONS - FLU (90285)Principle : Real Time PCRSpecimen : Throat swab /nasal swab / BAL/ SputumPathogens (03) : Influenza A(flu A), H1N1, Influenza B (flu B)

p16 PACKAGE LIST FLU PANEL (SUBTYPING) (90397) Principle : Real Time PCR Specimen : Throat/nasal swabs/ BAL/ Tracheal Aspirates/ Lung Tissue/ Sputum Pathogens (07) : RSV A, RSV B, FLU A, FLU B, FLU A – H1, FLU B – H3, FLU A - H1Pdm09(90287) RESPIRATORY INFECTIONS - HAP Real time PCR : Principle Throat swab/Nasal swab/ BAL/ Sputum : SpecimenKlebsiella pneumoniae, Pseudomonas aeruginosa : (03) Pathogens Acinetobacter spp., RESPIRATORY INFECTIONS - CAP I (90288) Principle : Real Time PCR Specimen : Throat swab/nasal swab / BAL/ Sputum Pathogens (07) : Streptococcus pneumoniae, Staph.aureus, Moraxella catarrhalis, Chlamydia pneumoniae, Haemophilus influenzae (type B), Bordetella spp.

p17 PACKAGE LIST RESPIRATORY INFECTIONS - CAP II (90289) Principle : Real Time PCR Specimen : Throat swab/nasal swab/ BAL/ Sputum Pathogens (07) : Haemophilus influenzae type B, Legionella spp., Moraxella catarrhalis, Staph.aureus, Streptococcus pneumoniae, Chlamydia pneumonia, Mycoplasma pneumoniae RESPIRATORY INFECTIONS - COMBINED I (90290) Real time PCR : Principle Throat swab/Nasal swab/ BAL/ Sputum : SpecimenInfluenza A (flu A), H1N1, Influenza B (flu B) : (24) PathogensRhinovirus, Coronavirus (Nl63, 229E,Oc43, HKU1), Bocavirus,Parainfluenza (1, 2, 3, 4), Human Metapneumovirus A/B, Mycoplasmapneumoniae, Respiratory syncytial virus A/B, Adenovirus, Enterovirus,Parechovirus, CMV, Streptococcus pneumonia, Chlamydiapneumoniae, Staphylococcus aureus, Haemophilus influenzae type B RESPIRATORY INFECTIONS - COMBINED II (90291) Principle : Real Time PCR Specimen : Throat swab/Nasal swab/ BAL/ Sputum Pathogens (28) : Influenza (A,B), H1N1, Rhinovirus, Bocavirus, CMV Coronavirus (Nl63,229E,oc43,HKU1), Parainfluenza (1, 2, 3, 4,), Mycoplasma pneumoniae, Respiratory syncytial virus A/B, Adenovirus, HMV A/B, Enterovirus, Streptococcus pneumonia, Chlamydia pneumoniae, Staphylococcus aureus, Haemophilus influenzae B, Klebsiella pneumoniae, Legionella spp., Salmonella spp., Pneumocystis jirovecii, Parechovirus

p18 PACKAGE LIST RESPIRATORY INFECTIONS - COMBINED III (90292) Principle : Real time PCR Specimen : AFB Culture Isolate(Solid / Liquid)/ BAL/ Tracheal Aspirates/ Lung Tissue /Sputum Pathogens (32) : Influenza (A,B,C), H1N1, Rhinovirus, Bocavirus, Coronavirus (Nl63, 229E, oc43, HKU1), Parainfluenza (1,2, 3, 4), HMPV A/B, Mycoplasma pneumoniae, HRSV A/B, Adenovirus, Enterovirus, CM6V, Parechovirus, pneumococcus, Chlamydia pneumoniae, Staphylococcus aureus, H.influenza type B, Klebsiella pneumoniae, Bordetella spp, Legionella spp, Salmonella spp, Pneumocystis jirovecii, Moraxella catarrhalis, Haemophilus influenzae type B(90286) RESPIRATORY INFECTIONS - CORONA Real Time PCR : Principle Sputum/ BAL / Throat swab/ Nasal swab : Specimen Coronavirus NL63, Coronavirus 229E : (04) Pathogens Coronavirus OC43, Coronavirus HKU1,Gene Xpert (MTB/RIF) assay (90167)Principle : Real time PCRSpecimen : Sputum (Direct & NALC Processed)/ CSF/ Pleural Fluids/ Urine/ Bronchial washing (BAL)/ Tissue /AFB Culture Fluid (Solid & Liquid)Pathogens (02) : Mycobacterium tuberculosis(MTB) WithRifampicin drug susceptibility pattern

p19 PACKAGE LIST MDR Susceptibility PCR (MCA) (90322) Principle : Real time PCR (DPOTM and TOCETM Technology) Specimen : AFB Culture Isolate(Solid / Liquid)/ BAL/ Tracheal Aspirates/ Lung Tissue /Sputum Pathogens (04) : Mycobacterium tuberculosis with Rifampicin & Isoniazid drug susceptibility patterns(90324) XDR Susceptibility (PCR) MCA Real time PCR (DPOTM and TOCETM Technology) : PrincipleAFB Culture Isolate(Solid / Liquid)/ BAL/ Tracheal Aspirates/ Lung Tissue /Sputum : SpecimenMycobacterium tuberculosis with Fluoroquinolone : (06) PathogensAmikacin, Kanamycin & Capreomycin drug susceptibility patterns,XDR MDR/XDR Susceptibility (PCR) MCA (90325) Principle : Real time PCR(DPOTM & TOCETM Technology) Specimen : AFB Culture Isolate(Solid / Liquid)/ BAL/ Tracheal Aspirates/ Lung Tissue /Sputum Pathogens (09) : Mycobacterium tuberculosis with Rifampicin, Isoniazid, & Fluoroquinolone, Amikacin, Kanamycin, Capreomycin drug susceptibility patterns, MDR & XDR

p20 PACKAGE LIST MTB/MOTT DNA PCR (90226) Principle : Real time PCR (DPOTM and TOCETM Technology) Specimen : AFB Culture Isolate(Solid / Liquid)/ BAL/ Tracheal Aspirates/ Lung Tissue /Sputum Pathogens (02) : Mycobacterium tuberculosis(MTB) & Atypical Mycobacteria(MOTT)(90294) EYE INFECTION Real time PCR : Principle Eye Swab : SpecimenHSV1, VZV, HSV2, Chlamydia trachomatis : (05) Pathogens Adenovirus DERMATOPHYTES (90295) Principle : Real Time PCR Specimen : Skin scale/ Plucked hair/ Nails/ Culture or swab/ Blood/ CSF Pathogens (07) : T.mentagrophytes complex, T.tonsurans T.violaceum, T.rubrum complex, M.canis, M.audouinii, M.ferrugineum

p21 PACKAGE LIST PAN FUNGAL DNA (90307) Principle : Real Time PCR Specimen : Skin scale/ Plucked hair/ Nails/ Culture or swab/ Blood/ CSF Pathogens : All Fungus Histoplasma capsulatum Real time PCR : Principle Any Body Fluid : SpecimenHistoplasma capsulatum : (01) Pathogen Blastomyces dermatidis Principle : Real Time PCR Specimen : Any Body Fluid Pathogen (01) : Blastomyces dermatidis

p22 PACKAGE LIST BLOOD BANK ID SCREEN PANEL (VIRAL) (90346) Principle : Real Time PCR Specimen : Blood /Plasma Pathogens(03) : HCV RNA, HBV DNA, HIV -1 RNA Qualitative(90293) INFECTIONS OF THE IMMUNOSUPPRESSED Real time PCR : Principle Blood : SpecimenEpstein – barr virus, Cytomegalovirus, BK virus : (03) Pathogens(Qualitative & Quantitative) HBV DNA QUANTITATIVE (90265) Principle : Real Time PCR Specimen : Plasma Pathogen (01) : Hepatitis B Virus

p23 PACKAGE LIST (09038) HBV DNA QUALITATIVE Principle : Real Time PCR Specimen : Plasma Pathogen (01) : Hepatitis B Virus(90267) HCV RNA QUANTITATIVE Real Time PCR : Principle Plasma : Specimen Hepatitis C Virus : (01) Pathogen HCV RNA QUALITATIVE (09039) Principle : Real Time PCR Specimen : Plasma Pathogen (01) : Hepatitis C Virus

p24 PACKAGE LIST HIV 1 RNA QUANTITATIVE (90266) Principle : Real Time PCR Specimen : Plasma Pathogen (01) : Human Immunodeficiency Virus Type I (HIV-1)(09037) HIV 1 RNA QUALITATIVE Real Time PCR : Principle Plasma : SpecimenHuman Immunodeficiency Virus Type I (HIV-1) : (01) Pathogen BKV DNA QUANTITATIVE (09185/09186) Principle : Real Time PCR Specimen : Plasma/ Urine Pathogen (01) : BK Virus (Polyoma Virus)

p25 PACKAGE LIST (09030) CMV DNA QUANTITATIVE Principle : Real Time PCR Specimen : Plasma/ Fluid/ Tissue Pathogen (01) : Cytomegalovirus (CMV)(09319) CMV DNA QUALITATIVE Real Time PCR : Principle Plasma : Specimen Cytomegalovirus (CMV) : (01) Pathogen

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